Time ElementΒΆ

This element intends to bundle all of the various ways of denoting time or age in phenopackets schema. Starting with version 2, other elements will be required to use a TimeElement rather than any of the more specific elements. For instance, the version 1.0 of phenotyperst uses an ontologyclassrst for the age of onset of the phenotypic feature. Version 2 will replace this with a TimeElement. This will mean that all references to time and age throughout the phenopacket standard are uniform. That this change was needed became obvious when trying to model an acute phenotypic abnormality such as an episode of fever occuring one day before admission to the hospital.

Schema

This is the protobuf definition of the TimeElement.

message TimeElement {
  oneof element {
      Age age = 1;
      AgeRange age_range = 2;
      OntologyClass ontology_class = 3;
      google.protobuf.Timestamp timestamp = 4;
      Interval interval = 5;
  }
}

That is, the TimeElement is defined to contain one of the following components:

If an OntologyClass is used, then terms for age of onset can be chosen from the Onset subhierarchy of the HPO.